FALSE Registered S3 methods overwritten by 'dbplyr':
FALSE method from
FALSE print.tbl_lazy
FALSE print.tbl_sql
FALSE -- Attaching packages --------------------------------------------------------------------------------------------- tidyverse 1.3.1 --
FALSE √ ggplot2 3.3.5 √ purrr 0.3.4
FALSE √ tibble 3.1.6 √ dplyr 1.0.8
FALSE √ tidyr 1.2.0 √ stringr 1.4.0
FALSE √ readr 2.1.2 √ forcats 0.5.1
FALSE -- Conflicts ------------------------------------------------------------------------------------------------ tidyverse_conflicts() --
FALSE x dplyr::filter() masks stats::filter()
FALSE x dplyr::lag() masks stats::lag()
FALSE
FALSE Attaching package: ‘scales’
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FALSE The following object is masked from ‘package:purrr’:
FALSE
FALSE discard
FALSE
FALSE The following object is masked from ‘package:readr’:
FALSE
FALSE col_factor
FALSE
FALSE Registered S3 method overwritten by 'data.table':
FALSE method from
FALSE print.data.table
FALSE Registered S3 methods overwritten by 'htmltools':
FALSE method from
FALSE print.html tools:rstudio
FALSE print.shiny.tag tools:rstudio
FALSE print.shiny.tag.list tools:rstudio
FALSE Registered S3 method overwritten by 'htmlwidgets':
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FALSE last_plot
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FALSE filter
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FALSE layout
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FALSE data.table 1.14.2 using 8 threads (see ?getDTthreads). Latest news: r-datatable.com
FALSE
FALSE Attaching package: ‘data.table’
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FALSE between, first, last
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FALSE transpose
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FALSE Attaching package: ‘lubridate’
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FALSE hour, isoweek, mday, minute, month, quarter, second, wday, week, yday, year
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FALSE date, intersect, setdiff, union
FALSE
FALSE Loading required package: kableExtra
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FALSE Attaching package: ‘kableExtra’
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FALSE group_rows
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FALSE Attaching package: ‘timetk’
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FALSE :=
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FALSE Loading required package: svd
FALSE Loading required package: forecast
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FALSE method from
FALSE as.zoo.data.frame zoo
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FALSE Attaching package: ‘Rssa’
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FALSE The following object is masked from ‘package:stats’:
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FALSE decompose
FALSE
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FALSE ‘tseries’ version: 0.10-50
FALSE
FALSE ‘tseries’ is a package for time series analysis and computational finance.
FALSE
FALSE See ‘library(help="tseries")’ for details.
FALSE
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FALSE intersect, setdiff, union
Warning: `funs()` was deprecated in dplyr 0.8.0.
Please use a list of either functions or lambdas:
# Simple named list:
list(mean = mean, median = median)
# Auto named with `tibble::lst()`:
tibble::lst(mean, median)
# Using lambdas
list(~ mean(., trim = .2), ~ median(., na.rm = TRUE))
This warning is displayed once every 8 hours.
Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.
Warning: Removed 404 row(s) containing missing values (geom_path).
Warning: Width not defined. Set with `position_dodge(width = ?)`
Warning in max(ids, na.rm = TRUE) :
no non-missing arguments to max; returning -Inf
Warning: Removed 7 row(s) containing missing values (geom_path).
Warning: Width not defined. Set with `position_dodge(width = ?)`
Warning in max(ids, na.rm = TRUE) :
no non-missing arguments to max; returning -Inf
Warning: Removed 206 row(s) containing missing values (geom_path).
Warning: Width not defined. Set with `position_dodge(width = ?)`
Warning in max(ids, na.rm = TRUE) :
no non-missing arguments to max; returning -Inf
Warning: Removed 45 row(s) containing missing values (geom_path).
Linking to GEOS 3.9.1, GDAL 3.2.1, PROJ 7.2.1; sf_use_s2() is TRUE
[1] "sf" "data.frame"
Rows: 161,025
Columns: 3
$ date <date> 2020-02-29, 2020-03-01, 2020-03-02, 2020-03-03, 2020-03-04, 2020-03-05, 2020-03-06, 2020-03-07, 2020-03-~
$ location <chr> "Afghanistan", "Afghanistan", "Afghanistan", "Afghanistan", "Afghanistan", "Afghanistan", "Afghanistan", ~
$ new_cases_smoothed <dbl> 0.714, 0.714, 0.000, 0.000, 0.000, 0.000, 0.000, 0.429, 0.429, 0.429, 0.429, 0.857, 0.857, 0.857, 0.857, ~
$upper
'dendrogram' with 2 branches and 2 members total, at height 19342438
$lower
$lower[[1]]
'dendrogram' with 2 branches and 200 members total, at height 5689823
$lower[[2]]
'dendrogram' with 2 branches and 16 members total, at height 6715621
Rows: 216
Columns: 2
$ Var1 <fct> Afghanistan, Albania, Algeria, Andorra, Angola, Anguilla, Antigua and Barbuda, Argentina, Armenia, Aruba, Australia, Au~
$ Freq <int> 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 2, 3, 1, 1, 1, 1, 1, 1, 3, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 3, 1, 1, 1, 1,~
Rows: 161,025
Columns: 4
$ date <date> 2020-02-29, 2020-03-01, 2020-03-02, 2020-03-03, 2020-03-04, 2020-03-05, 2020-03-06, 2020-03-07, 2020-03-~
$ location <chr> "Afghanistan", "Afghanistan", "Afghanistan", "Afghanistan", "Afghanistan", "Afghanistan", "Afghanistan", ~
$ new_cases_smoothed <dbl> 0.714, 0.714, 0.000, 0.000, 0.000, 0.000, 0.000, 0.429, 0.429, 0.429, 0.429, 0.857, 0.857, 0.857, 0.857, ~
$ cluster <int> 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, ~
1 2 3 4 5
168 14 32 1 1
Warning: Width not defined. Set with `position_dodge(width = ?)`
`geom_smooth()` using method = 'gam' and formula 'y ~ s(x, bs = "cs")'